Perry Miller

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(Created page with "{{Person|MainPicture=File:PerryMiller.gif‎| Name=Perry Miller| ACMIFellow=1985| Birthdate=| Degrees=| CurrentPosition=| email=| ProAffiliations=| ProActivities=| HonorsAwar...")
 
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SelectedPublications=ustavich LF, Miller P, Kidd KK, Zhao H. Using a pharmacokinetic model to
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Books=|
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relate an individual's susceptibility to alcohol dependence to genotypes. Hum
 +
Hered. 2010;70(3):177-93. Epub 2010 Aug 12.                                                                   
 +
 
 +
Marenco L, Wang R, Shepherd GM, Miller PL. The NIF DISCO Framework:
 +
facilitating automated integration of neuroscience content on the web.
 +
Neuroinformatics. 2010 Jun;8(2):101-12.                                                                       
 +
 
 +
Samwald M, Chen H, Ruttenberg A, Lim E, Marenco L, Miller P, Shepherd G,
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Cheung KH. Semantic SenseLab: Implementing the vision of the Semantic Web in
 +
neuroscience. Artif Intell Med. 2010 Jan;48(1):21-8. Epub 2009 Dec 16.                                         
 +
 
 +
Samwald M, Lim E, Masiar P, Marenco L, Chen H, Morse T, Mutalik P, Shepherd G,
 +
Miller P, Cheung KH. Entrez Neuron RDFa: a pragmatic semantic web application for
 +
data integration in neuroscience research. Stud Health Technol Inform.
 +
2009;150:317-21.                                                                                               
 +
 
 +
Bernstam EV, Hersh WR, Johnson SB, Chute CG, Nguyen H, Sim I, Nahm M, Weiner
 +
MG, Miller P, DiLaura RP, Overcash M, Lehmann HP, Eichmann D, Athey BD,
 +
Scheuermann RH, Anderson N, Starren J, Harris PA, Smith JW, Barbour E,
 +
Silverstein JC, Krusch DA, Nagarajan R, Becich MJ; CTSA Biomedical Informatics                                 
 +
Key Function Committee. Synergies and distinctions between computational
 +
disciplines in biomedical research: perspective from the Clinical
 +
andTranslational Science Award programs. Acad Med. 2009 Jul;84(7):964-70.
 +
 
 +
 
 +
Cheung KH, Lim E, Samwald M, Chen H, Marenco L, Holford ME, Morse TM, Mutalik
 +
P, Shepherd GM, Miller PL. Approaches to neuroscience data integration. Brief
 +
Bioinform. 2009 Jul;10(4):345-53.                                                                             
 +
 
 +
Marenco L, Ascoli GA, Martone ME, Shepherd GM, Miller PL. The NIF LinkOut
 +
broker: a web resource to facilitate federated data integration using NCBI
 +
identifiers. Neuroinformatics. 2008 Sep;6(3):219-27. Epub 2008 Oct 31.                                         
 +
 
 +
Gupta A, Bug W, Marenco L, Qian X, Condit C, Rangarajan A, Müller HM, Miller
 +
PL, Sanders B, Grethe JS, Astakhov V, Shepherd G, Sternberg PW, Martone ME.
 +
Federated access to heterogeneous information resources in the Neuroscience
 +
Information Framework (NIF). Neuroinformatics. 2008 Sep;6(3):205-17. Epub 2008                                 
 +
 
 +
Marenco L, Li Y, Martone ME, Sternberg PW, Shepherd GM, Miller PL. Issues in
 +
the design of a pilot concept-based query interface for the neuroinformatics
 +
information framework. Neuroinformatics. 2008 Sep;6(3):229-39. Epub 2008 Oct 25.                               
 +
 
 +
Gardner D, Akil H, Ascoli GA, Bowden DM, Bug W, Donohue DE, Goldberg DH,
 +
Grafstein B, Grethe JS, Gupta A, Halavi M, Kennedy DN, Marenco L, Martone ME,
 +
Miller PL, Müller HM, Robert A, Shepherd GM, Sternberg PW, Van Essen DC, Williams
 +
RW. The neuroscience information framework: a data and knowledge environment for
 +
neuroscience. Neuroinformatics. 2008 Sep;6(3):149-60. Epub 2008 Oct 23.                                       
 +
 
 +
Bjornson RD, Carriero NJ, Colangelo C, Shifman M, Cheung KH, Miller PL,
 +
Williams K. X!!Tandem, an improved method for running X!tandem in parallel on
 +
collections of commodity computers. J Proteome Res. 2008 Jan;7(1):293-9. Epub                                 
 +
2007 Sep 29.
 +
 
 +
Liu N, Xu F, Miller PL, Shepherd GM. OdorMapComparer: an application for
 +
quantitative analyses and comparisons of fMRI brain odor maps. Neuroinformatics.
 +
2007 Summer;5(2):105-14.                                                                                       
 +
 
 +
Shifman MA, Li Y, Colangelo CM, Stone KL, Wu TL, Cheung KH, Miller PL,
 +
Williams KR. YPED: a web-accessible database system for protein expression
 +
analysis. J Proteome Res. 2007 Oct;6(10):4019-24. Epub 2007 Sep 15.                                           
 +
 
 +
Dinu V, Zhao H, Miller PL. Integrating domain knowledge with statistical and
 +
data mining methods for high-density genomic SNP disease association analysis. J
 +
Biomed Inform. 2007 Dec;40(6):750-60. Epub 2007 Jun 10.                                                       
 +
 
 +
Rozowsky JS, Newburger D, Sayward F, Wu J, Jordan G, Korbel JO, Nagalakshmi
 +
U, Yang J, Zheng D, Guigó R, Gingeras TR, Weissman S, Miller P, Snyder M,
 +
Gerstein MB. The DART classification of unannotated transcription within the
 +
ENCODE regions: associating transcription with known and novel loci. Genome Res.
 +
 
 +
Crasto CJ, Marenco LN, Liu N, Morse TM, Cheung KH, Lai PC, Bahl G, Masiar P,
 +
Lam HY, Lim E, Chen H, Nadkarni P, Migliore M, Miller PL, Shepherd GM. SenseLab:
 +
new developments in disseminating neuroscience information. Brief Bioinform. 2007
 +
May;8(3):150-62. Epub 2007 May 17.                                                                             
 +
 
 +
Lam HY, Marenco L, Clark T, Gao Y, Kinoshita J, Shepherd G, Miller P, Wu E,
 +
Wong GT, Liu N, Crasto C, Morse T, Stephens S, Cheung KH. AlzPharm: integration
 +
of neurodegeneration data using RDF. BMC Bioinformatics. 2007 May 9;8 Suppl 3:S4.                             
 +
 
 +
Crasto CJ, Masiar P, Miller PL. NeuroExtract: facilitating
 +
neuroscience-oriented retrieval from broadly-focused bioscience databases using
 +
text-based query mediation. J Am Med Inform Assoc. 2007 May-Jun;14(3):355-60.                                 
 +
Epub 2007 Feb 28.
 +
 
 +
Dinu V, Miller PL, Zhao H. Evidence for association between multiple
 +
complement pathway genes and AMD. Genet Epidemiol. 2007 Apr;31(3):224-37.                                     
 +
 
 +
Lam HY, Marenco L, Shepherd GM, Miller PL, Cheung KH. Using web ontology
 +
language to integrate heterogeneous databases in the neurosciences. AMIA Annu
 +
Symp Proc. 2006:464-8.
 +
 
 +
Corwin J, Silberschatz A, Miller PL, Marenco L. Dynamic tables: an architecture for managing
 +
evolving, heterogeneous biomedical data in relational database management systems. J Am Med
 +
Inform Assoc. 2007 Jan-Feb;14(1):86-93. Epub 2006 Oct 26.                                                     
 +
 
 +
Bruce C, Shifman MA, Miller P, Gulcicek EE. Probabilistic enrichment of
 +
phosphopeptides by their mass defect. Anal Chem. 2006 Jul 1;78(13):4374-82.                                   
 +
 
 +
Shifman MA, Sun K, Colangelo CM, Cheung KH, Miller P, Williams K. YPED: a
 +
proteomics database for protein expression analysis. AMIA Annu Symp Proc.
 +
 
 +
Gerstein M, Greenbaum D, Cheung K, Miller PL. An interdepartmental Ph.D.
 +
program in computational biology and bioinformatics: the Yale perspective. J
 +
Biomed Inform. 2007 Feb;40(1):73-9. Epub 2006 Mar 6.                                                           
 +
 
 +
Liu N, Marenco L, Miller PL. ResourceLog: an embeddable tool for dynamically
 +
monitoring the usage of web-based bioscience resources. J Am Med Inform Assoc.
 +
2006 Jul-Aug;13(4):432-7. Epub 2006 Apr 18.                                                                   
 +
 
 +
Rajeevan H, Cheung KH, Gadagkar R, Stein S, Soundararajan U, Kidd JR, Pakstis
 +
AJ, Miller PL, Kidd KK. ALFRED: an allele frequency database for
 +
microevolutionary studies. Evol Bioinform Online. 2007 Feb 22;1:1-10.
 +
 
 +
Carriero N, Osier MV, Cheung KH, Miller PL, Gerstein M, Zhao H, Wu B, Rifkin
 +
S, Chang J, Zhang H, White K, Williams K, Schultz M. A high productivity/low
 +
maintenance approach to high-performance computation for biomedicine: four case
 +
studies. J Am Med Inform Assoc. 2005 Jan-Feb;12(1):90-8. Epub 2004 Oct 18.                                     
 +
 
 +
Marenco L, Wang TY, Shepherd G, Miller PL, Nadkarni P. QIS: A framework for
 +
biomedical database federation. J Am Med Inform Assoc. 2004 Nov-Dec;11(6):523-34.                             
 +
Epub 2004 Aug 6.
 +
 
 +
Cheung KH, Hager J, Pan D, Srivastava R, Mane S, Li Y, Miller P, Williams KR.
 +
KARMA: a web server application for comparing and annotating heterogeneous
 +
microarray platforms. Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W441-4.                               
 +
 
 +
Euskirchen G, Royce TE, Bertone P, Martone R, Rinn JL, Nelson FK, Sayward F,
 +
Luscombe NM, Miller P, Gerstein M, Weissman S, Snyder M. CREB binds to multiple
 +
loci on human chromosome 22. Mol Cell Biol. 2004 May;24(9):38
 +
Shifman MA, Srivastava R, Brandt CA, Li TR, White K, Miller PL. Exploring the
 +
portability of informatics capabilities from a clinical application to a
 +
bioscience application. J Am Med Inform Assoc. 2004 Jul-Aug;11(4):294-9. Epub                                 
 +
2004 Apr 2.
 +
 
 +
Gardner D, Toga AW, Ascoli GA, Beatty JT, Brinkley JF, Dale AM, Fox PT,
 +
Gardner EP, George JS, Goddard N, Harris KM, Herskovits EH, Hines ML, Jacobs GA,
 +
Jacobs RE, Jones EG, Kennedy DN, Kimberg DY, Mazziotta JC, Miller PL, Mori S,
 +
Mountain DC, Reiss AL, Rosen GD, Rottenberg DA, Shepherd GM, Smalheiser NR, Smith
 +
KP, Strachan T, Van Essen DC, Williams RW, Wong ST. Towards effective and
 +
rewarding data sharing. Neuroinformatics. 2003;1(3):289-95.                                                   
 +
 
 +
Crasto CJ, Marenco LN, Migliore M, Mao B, Nadkarni PM, Miller P, Shepherd GM.
 +
Text mining neuroscience journal articles to populate neuroscience databases.
 +
Neuroinformatics. 2003;1(3):215-37.                                                                           
 +
 
 +
Eckersley P, Egan GF, Amari S, Beltrame F, Bennett R, Bjaalie JG, Dalkara T,
 +
De Schutter E, Gonzalez C, Grillner S, Herz A, Hoffmann KP, Jaaskelainen IP,
 +
Koslow SH, Lee SY, Matthiessen L, Miller PL, da Silva FM, Novak M, Ravindranath
 +
V, Ritz R, Ruotsalainen U, Subramaniam S, Toga AW, Usui S, van Pelt J, Verschure
 +
P, Willshaw D, Wrobel A, Tang Y; OECD Working Group on Neuroinformatics.                                       
 +
Neuroscience data and tool sharing: a legal and policy framework for
 +
04-14.                                           
 +
 
 +
Liu N, Xu F, Marenco L, Hyder F, Miller P, Shepherd GM. Informatics
 +
approaches to functional MRI odor mapping of the rodent olfactory bulb:
 +
OdorMapBuilder and OdorMapDB. Neuroinformatics. 2004;2(1):3-18.                                               
 +
 
 +
 
 +
Shifman MA, Srivastava R, Brandt CA, Li TR, White K, Miller PL. Exploring the
 +
portability of informatics capabilities from a clinical application to a
 +
bioscience application. J Am Med Inform Assoc. 2004 Jul-Aug;11(4):294-9. Epub                                 
 +
2004 Apr 2.
 +
 
 +
Gardner D, Toga AW, Ascoli GA, Beatty JT, Brinkley JF, Dale AM, Fox PT,
 +
Gardner EP, George JS, Goddard N, Harris KM, Herskovits EH, Hines ML, Jacobs GA,
 +
Jacobs RE, Jones EG, Kennedy DN, Kimberg DY, Mazziotta JC, Miller PL, Mori S,
 +
Mountain DC, Reiss AL, Rosen GD, Rottenberg DA, Shepherd GM, Smalheiser NR, Smith
 +
KP, Strachan T, Van Essen DC, Williams RW, Wong ST. Towards effective and
 +
rewarding data sharing. Neuroinformatics. 2003;1(3):289-95.                                                   
 +
 
 +
Crasto CJ, Marenco LN, Migliore M, Mao B, Nadkarni PM, Miller P, Shepherd GM.
 +
Text mining neuroscience journal articles to populate neuroscience databases.
 +
Neuroinformatics. 2003;1(3):215-37.                                                                           
 +
 
 +
Eckersley P, Egan GF, Amari S, Beltrame F, Bennett R, Bjaalie JG, Dalkara T,
 +
De Schutter E, Gonzalez C, Grillner S, Herz A, Hoffmann KP, Jaaskelainen IP,
 +
Koslow SH, Lee SY, Matthiessen L, Miller PL, da Silva FM, Novak M, Ravindranath
 +
V, Ritz R, Ruotsalainen U, Subramaniam S, Toga AW, Usui S, van Pelt J, Verschure
 +
P, Willshaw D, Wrobel A, Tang Y; OECD Working Group on Neuroinformatics.                                       
 +
Neuroscience data and tool sharing: a legal and policy framework for
 +
neuroinformatics. Neuroinformatics. 2003;1(2):149-65.                                                         
 +
 
 +
Amari S, Beltrame F, Bjaalie JG, Dalkara T, De Schutter E, Egan GF, Goddard
 +
NH, Gonzalez C, Grillner S, Herz A, Hoffmann KP, Jaaskelainen I, Koslow SH, Lee
 +
SY, Matthiessen L, Miller PL, Da Silva FM, Novak M, Ravindranath V, Ritz R,
 +
Ruotsalainen U, Sebestra V, Subramaniam S, Tang Y, Toga AW, Usui S, Van Pelt J,
 +
Verschure P, Willshaw D, Wrobel A; OECD Neuroinformatics Working Group.                                       
 +
Neuroinformatics: the integration of shared databases and tools towards
 +
integrative neuroscience. J Integr Neurosci. 2002 Dec;1(2):117-28.                                             
 +
 
 +
Friedman CP, Altman RB, Kohane IS, McCormick KA, Miller PL, Ozbolt JG,
 +
Shortliffe EH, Stormo GD, Szczepaniak MC, Tuck D, Williamson J; American College                               
 +
of Medical Informatics. Training the next generation of informaticians: the
 +
impact of "BISTI" and bioinformatics--a report from the American College of
 +
Medical Informatics. J Am Med Inform Assoc. 2004 May-Jun;11(3):167-72. Epub 2004                               
 +
Feb 5.
 +
 
 +
Crasto CJ, Morse TM, Migliore M, Nadkarni P, Hines M, Brash DE, Miller PL,
 +
Shepherd GM. Creating knowledgebases to text-mine
 +
clustering techniques. AMIA Annu Symp Proc. 2003:821.
 +
 
 +
Cohen DB, Frawley SJ, Shifman MA, Miller PL, Brandt C. The integration of
 +
similar clinical research data collection instruments. AMIA Annu Symp Proc.
 +
2003:817.
 +
 
 +
Martone R, Euskirchen G, Bertone P, Hartman S, Royce TE, Luscombe NM, Rinn
 +
JL, Nelson FK, Miller P, Gerstein M, Weissman S, Snyder M. Distribution of
 +
NF-kappaB-binding sites across human chromosome 22. Proc Natl Acad Sci U S A.
 +
2003 Oct 14;100(21):12247-52. Epub 2003 Oct 3.                                                                 
 +
 
 +
Cheung KH, Hager J, Nelson K, White K, Li Y, Snyder M, Williams K, Miller P.
 +
A dynamic approach to mapping coordinates between microplates and microarrays. J
 +
Biomed Inform. 2002 Oct-Dec;35(5-6):306-12.                                                                   
 +
 
 +
Miller PN, Lawrence RJ, Powell RC. Discrete varieties of care in the clinical
 +
pastoral tradition: continuing the dialogue. J Pastoral Care Counsel. 2003
 +
Summer;57(2):111-6.                                                                                           
 +
 
 +
Marenco L, Tosches N, Crasto C, Shepherd G, Miller PL, Nadkarni PM. Achieving
 +
evolvable Web-database bioscience applications using the EAV/CR framework: recent
 +
advances. J Am Med Inform Assoc. 2003 Sep-Oct;10(5):444-53. Epub 2003 Jun 4.                                   
 +
 
 +
Rinn JL, Euskirchen G, Bertone P, Martone R, Luscombe NM, Hartman S, Harrison
 +
PM, Nelson FK, Miller P, Gerstein M, Weissman S, Snyder M. The transcriptional
 +
activity of human Chromosome 22. Genes Dev. 2003 Feb 15;17(4):529-40.                                         
 +
 
 +
Cheung KH, White K, Hager J, Gerstein M, Reinke V, Nelson K, Masiar P,
 +
Srivastava R, Li Y, Li J, Zhao H, Li J, Allison DB, Snyder M, Miller P, Williams
 +
K. YMD: a microarray database for large-scale gene expression analysis. Proc AMIA
 +
Symp. 2002:140-4.
 +
 
 +
Brandt CA, Morse R, Matthews K, Sun K, Deshpande AM, Gadagkar R, Cohen DB,
 +
Miller PL, Nadkarni PM. Metadata-driven creation of data marts from an
 +
EAV-modeled clinical research database. Int J Med Inform. 2002 Nov
 +
12;65(3):225-41.                                                                                               
 +
 
 +
Shifman MA, Sayward FG, Mattie ME, Miller PL. Exploring issues of quality of
 +
service in a Next Generation Internet testbed: a case study using PathMaster. J
 +
Am Med Inform Assoc. 2002 Sep-Oct;9(5):491-9.                                                                 
 +
 
 +
Osier MV, Cheung KH, Kidd JR, Pakstis AJ, Miller PL, Kidd KK. ALFRED: An
 +
allele frequency database for anthropology. Am J Phys Anthropol. 2002
 +
Sep;119(1):77-83.                                                                                             
 +
 
 +
Kumar A, Agarwal S, Heyman JA, Matson S, Heidtman M, Piccirillo S, Umansky L,
 +
Drawid A, Jansen R, Liu Y, Cheung KH, Miller P, Gerstein M, Roeder GS, Snyder M.
 +
Subcellular localization of the yeast proteome. Genes Dev. 2002 Mar
 +
15;16(6):707-19.                                                                                               
 +
 
 +
Kumar A, Harrison PM, Cheung KH, Lan N, Echols N, Bertone P, Miller P,
 +
Gerstein MB, Snyder M. An integrated approach for finding overlooked genes in
 +
yeast. Nat Biotechnol. 2002 Jan;20(1):58-63.                                                                   
 +
 
 +
Crasto C, Marenco L, Miller P, Shepherd G. Olfactory Receptor Database: a
 +
metadata-driven automated population from sources of gene and protein sequences.
 +
Nucleic Acids Res. 2002 Jan 1;30(1):354-60.                                                                   
 +
 
 +
Kumar A, Cheung KH, Tosches N, Masiar P, Liu Y, Miller P, Snyder M. The
 +
TRIPLES database: a community resource for yeast molecular biology. Nucleic Acids
 +
Res. 2002 Jan 1;30(1):73-5.
 +
|
 +
Books=Main title:        Selected topics in medical artificial intelligence / Perry
 +
                      L. Miller, editor.
 +
Published/Created: New York : Springer-Verlag, c1988.
 +
Related names:    Miller, Perry L.
 +
ISBN:              038796701X
 +
 
 +
 
 +
Personal name:    Miller, Perry L.
 +
Main title:        A critiquing approach to expert computer advice--ATTENDING
 +
                      / Perry L. Miller.
 +
Published/Created: Boston : Pitman, 1984.
 +
ISBN:              0273086650 : $18.00
 +
 
 +
 
 +
Personal name:    Miller, Perry L.
 +
Main title:        Expert critiquing systems : practice-based medical
 +
                      consultation by computer / Perry L. Miller.
 +
Published/Created: New York : Springer-Verlag, c1986.
 +
ISBN:              0387962913 : $37.00 (est.)
 +
Series:            Computers and medicine
 +
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Latest revision as of 16:51, 16 March 2012

PerryMiller.gif‎

Name: Perry Miller

Elected ACMI Fellow: 1985

Birthdate:

Degrees:

Current Position:

Current email:

Professional Affiliations:

Professional Activities:

Honors and Awards:

Other Works:

Other Information:

Curriculum Vitae:


Selected Publications: 

ustavich LF, Miller P, Kidd KK, Zhao H. Using a pharmacokinetic model to
relate an individual's susceptibility to alcohol dependence to genotypes. Hum
Hered. 2010;70(3):177-93. Epub 2010 Aug 12.                                                                     

Marenco L, Wang R, Shepherd GM, Miller PL. The NIF DISCO Framework:
facilitating automated integration of neuroscience content on the web.
Neuroinformatics. 2010 Jun;8(2):101-12.                                                                         

Samwald M, Chen H, Ruttenberg A, Lim E, Marenco L, Miller P, Shepherd G,
Cheung KH. Semantic SenseLab: Implementing the vision of the Semantic Web in
neuroscience. Artif Intell Med. 2010 Jan;48(1):21-8. Epub 2009 Dec 16.                                          

Samwald M, Lim E, Masiar P, Marenco L, Chen H, Morse T, Mutalik P, Shepherd G,
Miller P, Cheung KH. Entrez Neuron RDFa: a pragmatic semantic web application for
data integration in neuroscience research. Stud Health Technol Inform.
2009;150:317-21.                                                                                                

Bernstam EV, Hersh WR, Johnson SB, Chute CG, Nguyen H, Sim I, Nahm M, Weiner
MG, Miller P, DiLaura RP, Overcash M, Lehmann HP, Eichmann D, Athey BD,
Scheuermann RH, Anderson N, Starren J, Harris PA, Smith JW, Barbour E,
Silverstein JC, Krusch DA, Nagarajan R, Becich MJ; CTSA Biomedical Informatics                                  
Key Function Committee. Synergies and distinctions between computational
disciplines in biomedical research: perspective from the Clinical
andTranslational Science Award programs. Acad Med. 2009 Jul;84(7):964-70.


Cheung KH, Lim E, Samwald M, Chen H, Marenco L, Holford ME, Morse TM, Mutalik
P, Shepherd GM, Miller PL. Approaches to neuroscience data integration. Brief
Bioinform. 2009 Jul;10(4):345-53.                                                                               

Marenco L, Ascoli GA, Martone ME, Shepherd GM, Miller PL. The NIF LinkOut
broker: a web resource to facilitate federated data integration using NCBI
identifiers. Neuroinformatics. 2008 Sep;6(3):219-27. Epub 2008 Oct 31.                                          

Gupta A, Bug W, Marenco L, Qian X, Condit C, Rangarajan A, Müller HM, Miller
PL, Sanders B, Grethe JS, Astakhov V, Shepherd G, Sternberg PW, Martone ME.
Federated access to heterogeneous information resources in the Neuroscience
Information Framework (NIF). Neuroinformatics. 2008 Sep;6(3):205-17. Epub 2008                                  

Marenco L, Li Y, Martone ME, Sternberg PW, Shepherd GM, Miller PL. Issues in
the design of a pilot concept-based query interface for the neuroinformatics
information framework. Neuroinformatics. 2008 Sep;6(3):229-39. Epub 2008 Oct 25.                                

Gardner D, Akil H, Ascoli GA, Bowden DM, Bug W, Donohue DE, Goldberg DH,
Grafstein B, Grethe JS, Gupta A, Halavi M, Kennedy DN, Marenco L, Martone ME,
Miller PL, Müller HM, Robert A, Shepherd GM, Sternberg PW, Van Essen DC, Williams
RW. The neuroscience information framework: a data and knowledge environment for
neuroscience. Neuroinformatics. 2008 Sep;6(3):149-60. Epub 2008 Oct 23.                                         

Bjornson RD, Carriero NJ, Colangelo C, Shifman M, Cheung KH, Miller PL,
Williams K. X!!Tandem, an improved method for running X!tandem in parallel on
collections of commodity computers. J Proteome Res. 2008 Jan;7(1):293-9. Epub                                   
2007 Sep 29.

Liu N, Xu F, Miller PL, Shepherd GM. OdorMapComparer: an application for
quantitative analyses and comparisons of fMRI brain odor maps. Neuroinformatics.
2007 Summer;5(2):105-14.                                                                                        

Shifman MA, Li Y, Colangelo CM, Stone KL, Wu TL, Cheung KH, Miller PL,
Williams KR. YPED: a web-accessible database system for protein expression
analysis. J Proteome Res. 2007 Oct;6(10):4019-24. Epub 2007 Sep 15.                                             

Dinu V, Zhao H, Miller PL. Integrating domain knowledge with statistical and
data mining methods for high-density genomic SNP disease association analysis. J
Biomed Inform. 2007 Dec;40(6):750-60. Epub 2007 Jun 10.                                                         

Rozowsky JS, Newburger D, Sayward F, Wu J, Jordan G, Korbel JO, Nagalakshmi
U, Yang J, Zheng D, Guigó R, Gingeras TR, Weissman S, Miller P, Snyder M,
Gerstein MB. The DART classification of unannotated transcription within the
ENCODE regions: associating transcription with known and novel loci. Genome Res.

Crasto CJ, Marenco LN, Liu N, Morse TM, Cheung KH, Lai PC, Bahl G, Masiar P,
Lam HY, Lim E, Chen H, Nadkarni P, Migliore M, Miller PL, Shepherd GM. SenseLab:
new developments in disseminating neuroscience information. Brief Bioinform. 2007
May;8(3):150-62. Epub 2007 May 17.                                                                              

Lam HY, Marenco L, Clark T, Gao Y, Kinoshita J, Shepherd G, Miller P, Wu E,
Wong GT, Liu N, Crasto C, Morse T, Stephens S, Cheung KH. AlzPharm: integration
of neurodegeneration data using RDF. BMC Bioinformatics. 2007 May 9;8 Suppl 3:S4.                               

Crasto CJ, Masiar P, Miller PL. NeuroExtract: facilitating
neuroscience-oriented retrieval from broadly-focused bioscience databases using
text-based query mediation. J Am Med Inform Assoc. 2007 May-Jun;14(3):355-60.                                   
Epub 2007 Feb 28.

Dinu V, Miller PL, Zhao H. Evidence for association between multiple
complement pathway genes and AMD. Genet Epidemiol. 2007 Apr;31(3):224-37.                                       

Lam HY, Marenco L, Shepherd GM, Miller PL, Cheung KH. Using web ontology
language to integrate heterogeneous databases in the neurosciences. AMIA Annu
Symp Proc. 2006:464-8.

Corwin J, Silberschatz A, Miller PL, Marenco L. Dynamic tables: an architecture for managing
evolving, heterogeneous biomedical data in relational database management systems. J Am Med
Inform Assoc. 2007 Jan-Feb;14(1):86-93. Epub 2006 Oct 26.                                                       

Bruce C, Shifman MA, Miller P, Gulcicek EE. Probabilistic enrichment of
phosphopeptides by their mass defect. Anal Chem. 2006 Jul 1;78(13):4374-82.                                     

Shifman MA, Sun K, Colangelo CM, Cheung KH, Miller P, Williams K. YPED: a
proteomics database for protein expression analysis. AMIA Annu Symp Proc.

Gerstein M, Greenbaum D, Cheung K, Miller PL. An interdepartmental Ph.D.
program in computational biology and bioinformatics: the Yale perspective. J
Biomed Inform. 2007 Feb;40(1):73-9. Epub 2006 Mar 6.                                                            

Liu N, Marenco L, Miller PL. ResourceLog: an embeddable tool for dynamically
monitoring the usage of web-based bioscience resources. J Am Med Inform Assoc.
2006 Jul-Aug;13(4):432-7. Epub 2006 Apr 18.                                                                     

Rajeevan H, Cheung KH, Gadagkar R, Stein S, Soundararajan U, Kidd JR, Pakstis
AJ, Miller PL, Kidd KK. ALFRED: an allele frequency database for
microevolutionary studies. Evol Bioinform Online. 2007 Feb 22;1:1-10.

Carriero N, Osier MV, Cheung KH, Miller PL, Gerstein M, Zhao H, Wu B, Rifkin
S, Chang J, Zhang H, White K, Williams K, Schultz M. A high productivity/low
maintenance approach to high-performance computation for biomedicine: four case
studies. J Am Med Inform Assoc. 2005 Jan-Feb;12(1):90-8. Epub 2004 Oct 18.                                      

Marenco L, Wang TY, Shepherd G, Miller PL, Nadkarni P. QIS: A framework for
biomedical database federation. J Am Med Inform Assoc. 2004 Nov-Dec;11(6):523-34.                               
Epub 2004 Aug 6.

Cheung KH, Hager J, Pan D, Srivastava R, Mane S, Li Y, Miller P, Williams KR.
KARMA: a web server application for comparing and annotating heterogeneous
microarray platforms. Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W441-4.                                

Euskirchen G, Royce TE, Bertone P, Martone R, Rinn JL, Nelson FK, Sayward F,
Luscombe NM, Miller P, Gerstein M, Weissman S, Snyder M. CREB binds to multiple
loci on human chromosome 22. Mol Cell Biol. 2004 May;24(9):38
Shifman MA, Srivastava R, Brandt CA, Li TR, White K, Miller PL. Exploring the
portability of informatics capabilities from a clinical application to a
bioscience application. J Am Med Inform Assoc. 2004 Jul-Aug;11(4):294-9. Epub                                   
2004 Apr 2.

Gardner D, Toga AW, Ascoli GA, Beatty JT, Brinkley JF, Dale AM, Fox PT,
Gardner EP, George JS, Goddard N, Harris KM, Herskovits EH, Hines ML, Jacobs GA,
Jacobs RE, Jones EG, Kennedy DN, Kimberg DY, Mazziotta JC, Miller PL, Mori S,
Mountain DC, Reiss AL, Rosen GD, Rottenberg DA, Shepherd GM, Smalheiser NR, Smith
KP, Strachan T, Van Essen DC, Williams RW, Wong ST. Towards effective and
rewarding data sharing. Neuroinformatics. 2003;1(3):289-95.                                                     

Crasto CJ, Marenco LN, Migliore M, Mao B, Nadkarni PM, Miller P, Shepherd GM.
Text mining neuroscience journal articles to populate neuroscience databases.
Neuroinformatics. 2003;1(3):215-37.                                                                             

Eckersley P, Egan GF, Amari S, Beltrame F, Bennett R, Bjaalie JG, Dalkara T,
De Schutter E, Gonzalez C, Grillner S, Herz A, Hoffmann KP, Jaaskelainen IP,
Koslow SH, Lee SY, Matthiessen L, Miller PL, da Silva FM, Novak M, Ravindranath
V, Ritz R, Ruotsalainen U, Subramaniam S, Toga AW, Usui S, van Pelt J, Verschure
P, Willshaw D, Wrobel A, Tang Y; OECD Working Group on Neuroinformatics.                                        
Neuroscience data and tool sharing: a legal and policy framework for
04-14.                                             

Liu N, Xu F, Marenco L, Hyder F, Miller P, Shepherd GM. Informatics
approaches to functional MRI odor mapping of the rodent olfactory bulb:
OdorMapBuilder and OdorMapDB. Neuroinformatics. 2004;2(1):3-18.                                                 


Shifman MA, Srivastava R, Brandt CA, Li TR, White K, Miller PL. Exploring the
portability of informatics capabilities from a clinical application to a
bioscience application. J Am Med Inform Assoc. 2004 Jul-Aug;11(4):294-9. Epub                                   
2004 Apr 2.

Gardner D, Toga AW, Ascoli GA, Beatty JT, Brinkley JF, Dale AM, Fox PT,
Gardner EP, George JS, Goddard N, Harris KM, Herskovits EH, Hines ML, Jacobs GA,
Jacobs RE, Jones EG, Kennedy DN, Kimberg DY, Mazziotta JC, Miller PL, Mori S,
Mountain DC, Reiss AL, Rosen GD, Rottenberg DA, Shepherd GM, Smalheiser NR, Smith
KP, Strachan T, Van Essen DC, Williams RW, Wong ST. Towards effective and
rewarding data sharing. Neuroinformatics. 2003;1(3):289-95.                                                     

Crasto CJ, Marenco LN, Migliore M, Mao B, Nadkarni PM, Miller P, Shepherd GM.
Text mining neuroscience journal articles to populate neuroscience databases.
Neuroinformatics. 2003;1(3):215-37.                                                                             

Eckersley P, Egan GF, Amari S, Beltrame F, Bennett R, Bjaalie JG, Dalkara T,
De Schutter E, Gonzalez C, Grillner S, Herz A, Hoffmann KP, Jaaskelainen IP,
Koslow SH, Lee SY, Matthiessen L, Miller PL, da Silva FM, Novak M, Ravindranath
V, Ritz R, Ruotsalainen U, Subramaniam S, Toga AW, Usui S, van Pelt J, Verschure
P, Willshaw D, Wrobel A, Tang Y; OECD Working Group on Neuroinformatics.                                        
Neuroscience data and tool sharing: a legal and policy framework for
neuroinformatics. Neuroinformatics. 2003;1(2):149-65.                                                           

Amari S, Beltrame F, Bjaalie JG, Dalkara T, De Schutter E, Egan GF, Goddard
NH, Gonzalez C, Grillner S, Herz A, Hoffmann KP, Jaaskelainen I, Koslow SH, Lee
SY, Matthiessen L, Miller PL, Da Silva FM, Novak M, Ravindranath V, Ritz R,
Ruotsalainen U, Sebestra V, Subramaniam S, Tang Y, Toga AW, Usui S, Van Pelt J,
Verschure P, Willshaw D, Wrobel A; OECD Neuroinformatics Working Group.                                         
Neuroinformatics: the integration of shared databases and tools towards
integrative neuroscience. J Integr Neurosci. 2002 Dec;1(2):117-28.                                              

Friedman CP, Altman RB, Kohane IS, McCormick KA, Miller PL, Ozbolt JG,
Shortliffe EH, Stormo GD, Szczepaniak MC, Tuck D, Williamson J; American College                                
of Medical Informatics. Training the next generation of informaticians: the
impact of "BISTI" and bioinformatics--a report from the American College of
Medical Informatics. J Am Med Inform Assoc. 2004 May-Jun;11(3):167-72. Epub 2004                                
Feb 5.

Crasto CJ, Morse TM, Migliore M, Nadkarni P, Hines M, Brash DE, Miller PL,
Shepherd GM. Creating knowledgebases to text-mine
clustering techniques. AMIA Annu Symp Proc. 2003:821.

Cohen DB, Frawley SJ, Shifman MA, Miller PL, Brandt C. The integration of
similar clinical research data collection instruments. AMIA Annu Symp Proc.
2003:817.

Martone R, Euskirchen G, Bertone P, Hartman S, Royce TE, Luscombe NM, Rinn
JL, Nelson FK, Miller P, Gerstein M, Weissman S, Snyder M. Distribution of
NF-kappaB-binding sites across human chromosome 22. Proc Natl Acad Sci U S A.
2003 Oct 14;100(21):12247-52. Epub 2003 Oct 3.                                                                  

Cheung KH, Hager J, Nelson K, White K, Li Y, Snyder M, Williams K, Miller P.
A dynamic approach to mapping coordinates between microplates and microarrays. J
Biomed Inform. 2002 Oct-Dec;35(5-6):306-12.                                                                     

Miller PN, Lawrence RJ, Powell RC. Discrete varieties of care in the clinical
pastoral tradition: continuing the dialogue. J Pastoral Care Counsel. 2003
Summer;57(2):111-6.                                                                                             

Marenco L, Tosches N, Crasto C, Shepherd G, Miller PL, Nadkarni PM. Achieving
evolvable Web-database bioscience applications using the EAV/CR framework: recent
advances. J Am Med Inform Assoc. 2003 Sep-Oct;10(5):444-53. Epub 2003 Jun 4.                                    

Rinn JL, Euskirchen G, Bertone P, Martone R, Luscombe NM, Hartman S, Harrison
PM, Nelson FK, Miller P, Gerstein M, Weissman S, Snyder M. The transcriptional
activity of human Chromosome 22. Genes Dev. 2003 Feb 15;17(4):529-40.                                           

Cheung KH, White K, Hager J, Gerstein M, Reinke V, Nelson K, Masiar P,
Srivastava R, Li Y, Li J, Zhao H, Li J, Allison DB, Snyder M, Miller P, Williams
K. YMD: a microarray database for large-scale gene expression analysis. Proc AMIA
Symp. 2002:140-4.

Brandt CA, Morse R, Matthews K, Sun K, Deshpande AM, Gadagkar R, Cohen DB,
Miller PL, Nadkarni PM. Metadata-driven creation of data marts from an
EAV-modeled clinical research database. Int J Med Inform. 2002 Nov
12;65(3):225-41.                                                                                                

Shifman MA, Sayward FG, Mattie ME, Miller PL. Exploring issues of quality of
service in a Next Generation Internet testbed: a case study using PathMaster. J
Am Med Inform Assoc. 2002 Sep-Oct;9(5):491-9.                                                                   

Osier MV, Cheung KH, Kidd JR, Pakstis AJ, Miller PL, Kidd KK. ALFRED: An
allele frequency database for anthropology. Am J Phys Anthropol. 2002
Sep;119(1):77-83.                                                                                               

Kumar A, Agarwal S, Heyman JA, Matson S, Heidtman M, Piccirillo S, Umansky L,
Drawid A, Jansen R, Liu Y, Cheung KH, Miller P, Gerstein M, Roeder GS, Snyder M.
Subcellular localization of the yeast proteome. Genes Dev. 2002 Mar
15;16(6):707-19.                                                                                                

Kumar A, Harrison PM, Cheung KH, Lan N, Echols N, Bertone P, Miller P,
Gerstein MB, Snyder M. An integrated approach for finding overlooked genes in
yeast. Nat Biotechnol. 2002 Jan;20(1):58-63.                                                                    

Crasto C, Marenco L, Miller P, Shepherd G. Olfactory Receptor Database: a
metadata-driven automated population from sources of gene and protein sequences.
Nucleic Acids Res. 2002 Jan 1;30(1):354-60.                                                                     

Kumar A, Cheung KH, Tosches N, Masiar P, Liu Y, Miller P, Snyder M. The
TRIPLES database: a community resource for yeast molecular biology. Nucleic Acids
Res. 2002 Jan 1;30(1):73-5.

Books 

Main title:        Selected topics in medical artificial intelligence / Perry
                      L. Miller, editor.
Published/Created: New York : Springer-Verlag, c1988.
Related names:     Miller, Perry L.
ISBN:              038796701X


Personal name:     Miller, Perry L.
Main title:        A critiquing approach to expert computer advice--ATTENDING
                      / Perry L. Miller.
Published/Created: Boston : Pitman, 1984.
ISBN:              0273086650 : $18.00


Personal name:     Miller, Perry L.
Main title:        Expert critiquing systems : practice-based medical
                      consultation by computer / Perry L. Miller.
Published/Created: New York : Springer-Verlag, c1986.
ISBN:              0387962913 : $37.00 (est.)
Series:            Computers and medicine

Additional Media:


Sources:

Retrieved from "http://infohistory.rutgers.edu/mediawiki/index.php/Perry_Miller"
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